THREE-DIMENSIONAL RECONSTRUCTION AND VISUALIZATION OF PLANT CELLS

Article Sidebar

Download PDF
Published Dec 29, 2020
DOI: https://doi.org/10.53874/jmar.v5i0.80

Main Article Content

Sharifa zaman
Shining Light Academy, Gilgit, Pakistan
B. Fatima
Mountain Area research center

Abstract

The mechanical properties (like sensory texture etc.) of plants/fruits directly depend on their microstructures. Therefore, it is very important to well understand the geometry and topology of cells in order to control the microstructure for better mechanical response. In this research, techniques of digital image processing and segmentation in conjunction with mathematical morphology models are used to visualize and analyze the 3D cells of potato. ImageJ and MATLAB are used throughout in this study. The labeled image stacks are essential for studying quantitative characterization of 3D cells, MATLAB is used to label each image stacks. By using MATLAB 12420 cells were segmented within a short period of time and labeled each cell uniquely.

Article Details

How to Cite
ZAMAN, Sharifa; FATIMA, B.. THREE-DIMENSIONAL RECONSTRUCTION AND VISUALIZATION OF PLANT CELLS. Journal of Mountain Area Research, [S.l.], v. 5, p. 28-35, dec. 2020. ISSN 2518-850X. Available at: <https://journal.kiu.edu.pk/index.php/JMAR/article/view/80>. Date accessed: 27 apr. 2024. doi: https://doi.org/10.53874/jmar.v5i0.80.
ABNT APA BibTeX CBE EndNote - EndNote format (Macintosh & Windows) MLA ProCite - RIS format (Macintosh & Windows) RefWorks Reference Manager - RIS format (Windows only) Turabian
Issue
Vol 5 (2020)
Section
Mathematical Sciences
Creative Commons License

This work is licensed under a Creative Commons Attribution 4.0 International License.

Papers accepted for publication become copyright of the Editorial Office, Journal of Mountain Area Research, Karakoram International University Gilgit, Gilgit-15100, Pakistan and authors will be asked to sign a copyright transfer agreement. Articles cannot be published until a signed copyright transfer agreement form has been received.
The work published in this journal is licensed under a Creative Commons Attribution 4.0 International License. 

References

[1] N. Rivier, "topological correlation in random cellular structures," de physique, pp. 9-155, 1985.
[2] R. Gliclesman, "Modeling polycrystalls with regular polyhedral materials research," pp. Vol 9,no. 2, 2006.
[3] M. Grandjean, ". In vivo analysis of cell division, cell growth and differentiation at the shoot apical meristem in arabidopsis," plant cell, pp. 74-87, 2004.
[4] M. K. Gancarz, "MICRO-STRUCTURE ANALYSIS OF PLANT TISSUES," Institute of Agrophysics Polish Academy of Sciences,Centre of Excellence for, p. 168, 2005.
[5] Aboav, "Metallography," p. 383, 1970.
[6] Weaire, "Metallography," p. 157, 1974.
[7] J. Von Neumann, "in Metal Interface," American Society for Metals, Cleveland, p. 108, 1952.
[8] H. Wang G. Liu, Li Meng, "Study on topological properties in the two dimensional grain networks via large scale Monte Carlo simulation," Elsevier B.V, pp. 165-169, 2015.
[9] H . Peng. "Proof of -editing is the bottle neck of 3Dneunon reconstruction,the problem and soluctions," Neuroin formatics, pp. 92-93:103-105, 2011.
[10] K. Cwajna et al, "Image processing and image Analysis in materials science allas part1," In proc int Conf sterelogy and image analysis in material, 1994,1995,200,2002.
[11] A. Ullah. "3D visualization and qutitative characterization of grains in polycrytalline iron, materials characterizatiob," American Scientific publishers, pp. 65-75, 2014.
[12] Marshall, "Origins of Cellular geometry," BMC Bology, 2011.